measurement-setkind
- Parent
- assay
- Children
- atac-peak, cell-population, measurement, measurement-matrix, otu, sgb, single-cell, tcr
- Identified by
:measurement-set/uidcontext id- Attributes
- 22
- Referenced by
- 1 attributes
Attributes
| Attribute | Type | Cardinality | Description |
|---|---|---|---|
| analysis-docker :measurement-set/analysis-docker | string | one | A link to the docker image for the container used to run the analysis |
| analysis-repository :measurement-set/analysis-repository | string | many | git remote of the repository containing the analysis code that generated this measurement-set |
| atac-peaks :measurement-set/atac-peaks | atac-peak | many | The ATAC peaks that are referenced by measurements in this measurement-set |
| cell-populations :measurement-set/cell-populations | cell-population | many | The cell populations that are referenced by measurements in this measurement-set |
| cellengine-experiment-revision-id :measurement-set/cellengine-experiment-revision-id | string | one | The id of the specific revision of the CellEngine experiment that generated this measurement-set |
| cnv-call-method :measurement-set/cnv-call-method | measurement-set.cnv-call-method | one | The calling methodology that produced :measurement/cnv-call or :measurement/cnv-call-score values for measurements in this measurement-set (e.g. the actual GISTIC2.0 algorithm vs. an ASCAT-derived GISTIC-style conversion vs. a targeted-panel pipeline vs. tCoNuT). Two measurement-sets carrying the same score attribute are not necessarily comparable unless they share this method -- see docs/measurement-comparability.md in pdc-unify-meta. This attribute refers to enums in the :measurement-set.cnv-call-method namespace. |
| description :measurement-set/description | string | one | A description for this measurement-set. A measurement set groups together measurements that are related. It can be used to indicate concepts such as: 1) Measurements that were performed as part of a separate experimental condition 2) Measurements that are derived from a separate computational analysis, e.g. a separate clustering run os a separate run of a variant calling pipeline |
| image-scale-um-per-pixel-x :measurement-set/image-scale-um-per-pixel-x | float | one | X-dimension scale factor for imaging data in um per pixel |
| image-scale-um-per-pixel-y :measurement-set/image-scale-um-per-pixel-y | float | one | Y-dimension scale factor for imaging data in um per pixel |
| measurement-matrices :measurement-set/measurement-matrices | measurement-matrix | many | The measurement values for this measurement set as matrix blobs (dense or sparse) |
| measurements :measurement-set/measurements | measurement | many | The measurement values for this measurement set |
| name :measurement-set/name | string | one | The name of the measurement set (e.g. 'baseline'). Must be unique within the scope of the parent assay |
| normalization-method :measurement-set/normalization-method | string | one | Freetext description of the normalization method used for measurements contained in the measurement-set (ie for gene expression measurements, normalization by housekeeping gene values) |
| otus :measurement-set/otus | otu | many | The OTU's that are referenced by measurements in this measurement-set |
| sgbs :measurement-set/sgbs | sgb | many | The SGB's (species genomic bins) referenced by this measurement-set |
| single-cells :measurement-set/single-cells | single-cell | many | The single cells that are referenced by measurements in this measurement-set |
| tcrs :measurement-set/tcrs | tcr | many | The TCRs that are referenced by measurements in this measurement-set |
| terra-namespace :measurement-set/terra-namespace | string | one | The Terra namespace associated with the pipeline that generated this measurement-set. |
| terra-submission-id :measurement-set/terra-submission-id | string | one | The id of the Terra submission associated with the pipeline that generated this measurement-set |
| terra-workflow :measurement-set/terra-workflow | string | one | The Terra worfklow associated with the pipeline that generated this measurement-set. |
| terra-workspace :measurement-set/terra-workspace | string | one | The Terra workspace associated with the pipeline that generated this measurement-set. |
| uid :measurement-set/uid | [string …] | oneunique identity | Synthetic unique ID for measurement-set |
Referenced by
| Attribute | On kind | Cardinality |
|---|---|---|
:assay/measurement-sets | assay | many |