patternschemav0.3.8

atac-peakkind

Parent
measurement-set
Identified by
:atac-peak/uid context id
Attributes
9
Referenced by
2 attributes

Attributes

AttributeTypeCardinalityDescription
-log10pvalue
:atac-peak/-log10pvalue
floatone-log10 of the p-value for local Poisson test at peak
-log10qvalue
:atac-peak/-log10qvalue
floatoneSimilar to -log10pvalue, but after Benjamini-Hochberg correction
fixed-width
:atac-peak/fixed-width
booleanoneWhether this peak was called in fixed width mode, i.e. all of the peaks are the same width, and have the summit of the peak as their center
genomic-coordinates
:atac-peak/genomic-coordinates
genomic-coordinateoneThe genomic coordinates of the ATAC peak
jointly-called
:atac-peak/jointly-called
booleanoneWhether this peak was derived by jointly calling on multiple samples
name
:atac-peak/name
stringoneThe name of the ATAC peak. Must be unique within the scope of the measurement-set
quality-score
:atac-peak/quality-score
longoneThe quality score for the peak. This is calculated as int(-10*log10qvalue)
summit-offset
:atac-peak/summit-offset
longoneThe offset of the peak summit from the beginning of the region
uid
:atac-peak/uid
[string …]oneunique identitySynthetic unique ID for atac-peaks

Referenced by