atac-peakkind
- Parent
- measurement-set
- Identified by
:atac-peak/uidcontext id- Attributes
- 9
- Referenced by
- 2 attributes
Attributes
| Attribute | Type | Cardinality | Description |
|---|---|---|---|
| -log10pvalue :atac-peak/-log10pvalue | float | one | -log10 of the p-value for local Poisson test at peak |
| -log10qvalue :atac-peak/-log10qvalue | float | one | Similar to -log10pvalue, but after Benjamini-Hochberg correction |
| fixed-width :atac-peak/fixed-width | boolean | one | Whether this peak was called in fixed width mode, i.e. all of the peaks are the same width, and have the summit of the peak as their center |
| genomic-coordinates :atac-peak/genomic-coordinates | genomic-coordinate | one | The genomic coordinates of the ATAC peak |
| jointly-called :atac-peak/jointly-called | boolean | one | Whether this peak was derived by jointly calling on multiple samples |
| name :atac-peak/name | string | one | The name of the ATAC peak. Must be unique within the scope of the measurement-set |
| quality-score :atac-peak/quality-score | long | one | The quality score for the peak. This is calculated as int(-10*log10qvalue) |
| summit-offset :atac-peak/summit-offset | long | one | The offset of the peak summit from the beginning of the region |
| uid :atac-peak/uid | [string …] | oneunique identity | Synthetic unique ID for atac-peaks |
Referenced by
| Attribute | On kind | Cardinality |
|---|---|---|
:measurement/atac-peak | measurement | one |
:measurement-set/atac-peaks | measurement-set | many |