patternschemav0.3.8

genomic-coordinatereference kind

Identified by
:genomic-coordinate/id global id
Attributes
6
Referenced by
6 attributes

Attributes

AttributeTypeCardinalityDescription
assembly
:genomic-coordinate/assembly
genomic-coordinate.assemblyoneThe reference genomic assembly for this coordinate, refers to idents in the 'assembly' namespace
contig
:genomic-coordinate/contig
stringoneThe genomic contig (e.g. the chromosome) for this coordinate as a string
end
:genomic-coordinate/end
longoneThe end position for this coordinate as an integer
id
:genomic-coordinate/id
stringoneunique identityThe id of this genomic coordinate as a string 'assembly:contig:strand:start:end'. Must be unique within the database
start
:genomic-coordinate/start
longoneThe start position for this coordinate as an integer
strand
:genomic-coordinate/strand
stringoneThe strand for this coordinate, either '+' or '-'

Referenced by