samplekind
- Parent
- dataset
- Identified by
:sample/uidcontext id- Attributes
- 16
- Referenced by
- 5 attributes
Attributes
| Attribute | Type | Cardinality | Description |
|---|---|---|---|
| container :sample/container | sample.container | one | The container that was initially used to collect this sample (if known), e.g. CPT tube, EDTA tube etc. Refers to idents in the 'sample.container' namespace |
| freetext-anatomic-site :sample/freetext-anatomic-site | string | one | The anatomical location from which this sample was collected in free text form |
| gdc-anatomic-site :sample/gdc-anatomic-site | gdc-anatomic-site | one | The anatomical location from which this sample was collected according to the Genomics Data Commons (GDC) vocabulary |
| id :sample/id | string | one | The id of the sample. Must be unique within a dataset, but not necessarily within the database |
| laterality :sample/laterality | sample.laterality | one | For tumors in paired organs, designates the side on which the specimen was obtained. This attribute was derived from GDC and refers to entities in the 'sample.laterality' namespace |
| metastasis :sample/metastasis | boolean | one | Whether this is a sample from a metastasis |
| recurrence :sample/recurrence | boolean | one | Whether this is a sample from a recurrence |
| specimen :sample/specimen | sample.specimen | one | The specimen type for this sample, refers to idents in the 'sample.specimen' namespace |
| study-day :sample/study-day | study-day | one | The study day when this sample was collected |
| subject :sample/subject | subject | one | The subject that this sample was derived from |
| timepoint :sample/timepoint | timepoint | one | The timepoint when this sample was collected |
| tissue-acquisition-method :sample/tissue-acquisition-method | sample.tissue-acquisition-method | one | The method by which this tissue sample was acquired. This attribute refers to enums in the :sample.tissue-acquisition-method namespace. |
| treatment-naive :sample/treatment-naive | boolean | one | This flag indicates that this sample was confirmed to be taken prior to any treatment with chemo/radiation/cell-therapy/immunotherapy. When present this flag should be used instead of trying to infer treatment status from clinical timeline or timepoint |
| tumor-type :sample/tumor-type | string | one | The tumor type. This is presently a string, but needs to be moved to an enum |
| type :sample/type | sample.type | one | The type of this sample (tumor / normal), refers to idents in the 'sample.type' namespace |
| uid :sample/uid | [string …] | oneunique identity | Synthetic unique ID for samples |