clinical-observationkind
- Parent
- clinical-observation-set
- Identified by
:clinical-observation/uidcontext id- Attributes
- 89
- Referenced by
- 1 attributes
Attributes
| Attribute | Type | Cardinality | Description |
|---|---|---|---|
| abs-basophils :clinical-observation/abs-basophils | double | one | Abs Basophils, in x10E9/L. Source feed writes this as /nl or x10E9/L; equivalent notations, normalised on import. |
| abs-eosinophils :clinical-observation/abs-eosinophils | double | one | Abs Eosinophils, in x10E9/L. Source feed writes this as /nl or x10E9/L; equivalent notations, normalised on import. |
| abs-immature-granulocytes :clinical-observation/abs-immature-granulocytes | double | one | Abs Immature Granulocytes, in x10E9/L. |
| abs-lymphocytes :clinical-observation/abs-lymphocytes | double | one | Abs Lymphocytes, in x10E9/L. Source feed writes this as /nl or x10E9/L; equivalent notations, normalised on import. |
| abs-monocytes :clinical-observation/abs-monocytes | double | one | Abs Monocytes, in x10E9/L. Source feed writes this as /nl or x10E9/L; equivalent notations, normalised on import. |
| abs-neutrophils :clinical-observation/abs-neutrophils | double | one | Abs Neutrophils, in x10E9/L. Source feed writes this as /nl or x10E9/L; equivalent notations, normalised on import. |
| absolute-leukocyte-count :clinical-observation/absolute-leukocyte-count | long | one | The absolute leukocyte count expressed in number of cells per microliter |
| absolute-monocyte-count :clinical-observation/absolute-monocyte-count | long | one | The absolute monocyte count expressed in number of cells per microliter |
| albumin :clinical-observation/albumin | double | one | Albumin, in g/dL. |
| alk-phos :clinical-observation/alk-phos | double | one | Alkaline phosphatase, in U/L. |
| alt :clinical-observation/alt | double | one | Alanine aminotransferase, in U/L. |
| anion-gap :clinical-observation/anion-gap | double | one | Anion gap, in mmol/L. |
| ast :clinical-observation/ast | double | one | Aspartate aminotransferase, in U/L. |
| biopsy :clinical-observation/biopsy | string | one | Freetext type of biopsy taken. Result can be stored in freetext-result |
| bmi :clinical-observation/bmi | float | one | The body mass index of the subject. Unless more information is available, such observations should be connected to the baseline timepoint |
| bor :clinical-observation/bor | clinical-observation.bor | one | The best overall response (RECIST) of the subject. Such observations should be connected to the End of Study (EOS) timepoint |
| bun :clinical-observation/bun | double | one | Blood urea nitrogen, in mg/dL. |
| ca19-9 :clinical-observation/ca19-9 | float | one | CA19-9 (Cancer Antigen 19-9) measurement from blood, in U/mL |
| calcium :clinical-observation/calcium | double | one | Calcium, in mg/dL. |
| chloride :clinical-observation/chloride | double | one | Chloride, in mmol/L. |
| co2 :clinical-observation/co2 | double | one | Carbon dioxide (bicarbonate), in mmol/L. |
| creatinine :clinical-observation/creatinine | double | one | Creatinine, in mg/dL. |
| ctc :clinical-observation/ctc | float | one | CTC (Ciculating Tumor Cells) measurement from blood, in CTC/7.5 mL whole blood |
| dcb :clinical-observation/dcb | boolean | one | Whether this patient has experienced Durable Clinical Benefit. Such observations should be connected to the End of Study (EOS) timepoint |
| detection :clinical-observation/detection | clinical-observation.detection | one | Detection status of the result: refers to enums in the clinical-observation.detection namespace -- detected, not-detected, below-loq. |
| dfi :clinical-observation/dfi | float | one | The length of time (in months) the length of time after primary treatment for a cancer ends that the patient survives without any signs or symptoms of that cancer. Such observations should be connected to the End of Study (EOS) timepoint |
| dfi-event :clinical-observation/dfi-event | boolean | one | If DFI observation is censored (use false as the value) or connected to an event (use true) |
| dfi-reason :clinical-observation/dfi-reason | clinical-observation.event-reason | one | The reason (e.g. progression, censoring etc.) supplied for clinical observation DFI. Refers to entities in the :clinical-observation.event-reason namespace. See https://candel.parkerici.org/schema/#representing-data-for-survival-analysis-eg-pfs-os-etc for more information about modeling survival data |
| disease-stage :clinical-observation/disease-stage | clinical-observation.disease-stage | one | The stage of the disease. Refers to entities in the 'disease.stage' namespace. This is a clinical-observation in order to allow the possibility for re-staging (even though technically tumor stage is not a time-varying concept) |
| egfr :clinical-observation/egfr | double | one | Estimated glomerular filtration rate, in mL/min/1.73m2. |
| eosinophils :clinical-observation/eosinophils | double | one | Eosinophils %, in %. |
| freetext-result :clinical-observation/freetext-result | string | one | The result generated from this clinical observation |
| glucose :clinical-observation/glucose | double | one | Glucose, in mg/dL. |
| hematocrit :clinical-observation/hematocrit | double | one | Hematocrit, in %. |
| hemoglobin :clinical-observation/hemoglobin | double | one | Hemoglobin, in g/dL. |
| id :clinical-observation/id | string | one | The id of the clinical observation. Must be unique within this dataset (but not within the entire database) |
| imaging :clinical-observation/imaging | clinical-observation.imaging | many | The type of imaging that was done for this clincal observation |
| imaging-site :clinical-observation/imaging-site | string | many | Anatomic site where imaging was performed |
| inr :clinical-observation/inr | double | one | International normalised ratio. |
| ir-recist :clinical-observation/ir-recist | clinical-observation.ir-recist | one | The irRECIST (Immune Related Response Evaluation Critera in Solid Tumors) score for this observation, refers to idents in the 'ir.recist' namespace |
| lab-out-of-range :clinical-observation/lab-out-of-range | boolean | one | True when the reporting laboratory flagged this result outside its reference interval. |
| lab-reference-high :clinical-observation/lab-reference-high | double | one | Upper bound of the reporting laboratory's reference interval for this analyte. |
| lab-reference-low :clinical-observation/lab-reference-low | double | one | Lower bound of the reporting laboratory's reference interval for this analyte. Lab- and method-specific, so it is stored per result rather than per analyte. |
| lab-test :clinical-observation/lab-test | lab-test | one | The laboratory analyte this observation reports, for analytes outside the named common panels. Part of the clinical-observation composite id, so several analytes drawn the same day stay distinct entities. |
| lab-unit :clinical-observation/lab-unit | string | one | Unit the lab reported this result in, verbatim from the source feed. |
| lab-value :clinical-observation/lab-value | double | one | Numeric result for the :clinical-observation/lab-test analyte, in :clinical-observation/lab-unit. |
| ldh :clinical-observation/ldh | float | one | Lactate Dehydrogenase (LDH) measurement in blood, expressed in U/L |
| lymphocytes :clinical-observation/lymphocytes | double | one | Lymphocytes %, in %. |
| magnesium :clinical-observation/magnesium | double | one | Magnesium, in mg/dL. |
| mch :clinical-observation/mch | double | one | Mean corpuscular hemoglobin, in pg. |
| mchc :clinical-observation/mchc | double | one | Mean corpuscular hemoglobin concentration, in g/dL. |
| mcv :clinical-observation/mcv | double | one | Mean corpuscular volume, in fL. |
| metastasis-gdc-anatomic-sites :clinical-observation/metastasis-gdc-anatomic-sites | gdc-anatomic-site | many | The GDC anatomic site(s) at which metastasis have been observed |
| metastatic :clinical-observation/metastatic | boolean | one | Indicates that the disease has become metastatic |
| monocytes :clinical-observation/monocytes | double | one | Monocytes %, in %. |
| mpv :clinical-observation/mpv | double | one | Mean platelet volume, in fL. |
| natera-signatera-mtm-per-ml :clinical-observation/natera-signatera-mtm-per-ml | float | one | ctDNA fraction from Signatera in mtm/mL |
| neutrophils :clinical-observation/neutrophils | double | one | Neutrophils %, in %. |
| northstar-response-v2 :clinical-observation/northstar-response-v2 | float | one | Tumour-methylation response score from the BillionToOne Northstar Response v2 assay. Sits alongside the Signatera and Personalis ctDNA attributes; all three can be reported on the same day. |
| os :clinical-observation/os | float | one | The overall survival of the subject in months. Such observations should be connected to the End of Study (EOS) timepoint. |
| os-event :clinical-observation/os-event | boolean | one | If OS observation is censored (use false as the value) or connected to an event (use true) |
| os-reason :clinical-observation/os-reason | clinical-observation.event-reason | one | The reason (e.g. progression, censoring etc.) supplied for clinical observation OS. Refers to entities in the :clinical-observation.event-reason namespace. See https://candel.parkerici.org/schema/#representing-data-for-survival-analysis-eg-pfs-os-etc for more information about modeling survival data |
| personalis-nextpersonaldx-ctdnafraction-ppm :clinical-observation/personalis-nextpersonaldx-ctdnafraction-ppm | float | one | ctDNA fraction from Personalis NeXT assay in PPM |
| pfs :clinical-observation/pfs | float | one | The progression free survival of the subject in months. Such observations should be connected to the End of Study (EOS) timepoint |
| pfs-event :clinical-observation/pfs-event | boolean | one | If PFS observation is censored (use false as the value) or connected to an event (use true) |
| pfs-reason :clinical-observation/pfs-reason | clinical-observation.event-reason | one | The reason (e.g. progression, censoring etc.) supplied for clinical observation PFS. Refers to entities in the :clinical-observation.event-reason namespace. See https://candel.parkerici.org/schema/#representing-data-for-survival-analysis-eg-pfs-os-etc for more information about modeling survival data |
| platelets :clinical-observation/platelets | double | one | Platelets, in x10E9/L. |
| potassium :clinical-observation/potassium | double | one | Potassium, in mmol/L. |
| psa :clinical-observation/psa | float | one | PSA (Prostate-specific antigen) measurement from blood, in ng/mL |
| pt :clinical-observation/pt | double | one | Prothrombin time, in sec. |
| rano :clinical-observation/rano | clinical-observation.rano | one | RANO (Response Assessment in Neuro-Oncology) assessment for brain tumor patients (MRI-based) |
| rbc :clinical-observation/rbc | double | one | Red blood cell count, in x10E12/L. |
| rdw :clinical-observation/rdw | double | one | Red cell distribution width, in %. |
| recist :clinical-observation/recist | clinical-observation.recist | one | The RECIST (Response Evaluation Critera in Solid Tumors) score for this observation, refers to idents in the 'recist' namespace |
| recurrence :clinical-observation/recurrence | boolean | one | Indicates that the disease has recurred |
| sodium :clinical-observation/sodium | double | one | Sodium, in mmol/L. |
| study-day :clinical-observation/study-day | study-day | one | The study-day at which this observation was performed |
| subject :clinical-observation/subject | subject | one | The subject that this clinical observation was performed in |
| timepoint :clinical-observation/timepoint | timepoint | one | The timepoint at which this observation was performed |
| total-bilirubin :clinical-observation/total-bilirubin | double | one | Total Bilirubin, in mg/dL. |
| total-protein :clinical-observation/total-protein | double | one | Total Protein, in g/dL. |
| tsh :clinical-observation/tsh | double | one | Thyroid stimulating hormone, in mIU/L. Source feed writes this as mIU/L or mU/l; equivalent notations, normalised on import. |
| ttf :clinical-observation/ttf | float | one | The time to treatment failure of the subject in months. Such observations should be connected to the End of Study (EOS) timepoint |
| ttf-event :clinical-observation/ttf-event | boolean | one | If TTF observation is censored (use false as the value) or connected to an event (use true) |
| ttf-reason :clinical-observation/ttf-reason | clinical-observation.event-reason | one | The reason (e.g. progression, censoring etc.) supplied for clinical observation TTF. Refers to entities in the :clinical-observation.event-reason namespace. See https://candel.parkerici.org/schema/#representing-data-for-survival-analysis-eg-pfs-os-etc for more information about modeling survival data |
| tumor-sum-diam :clinical-observation/tumor-sum-diam | float | one | The sum of the tumor diameters in mm |
| tumor-sum-diam-perc-change :clinical-observation/tumor-sum-diam-perc-change | float | one | The percent change in the tumor sum of diameters. Must be a number in [-1 1] |
| uid :clinical-observation/uid | [string …] | oneunique identity | Synthetic unique ID for clinical observation |
| wbc :clinical-observation/wbc | double | one | White blood cell count, in x10E9/L. |
Referenced by
| Attribute | On kind | Cardinality |
|---|---|---|
:clinical-observation-set/clinical-observations | clinical-observation-set | many |